Amber Visualization

• Visualizing Amber structures and trajectories

• MOIL-View: an Amber and LES-aware molecular graphics package
• MD Display, a lightweight, Amber-aware trajectory viewer
• Visual Molecular Dynamics (VMD), another Amber-aware molecular visualization package
• Chimera, still another Amber-aware molecular visualization package
• IED, (Interactive Essential Dynamics) allows analysis and visualization of essential dynamics (aka quasiharmonic) and normal mode results.
• DNA plotting tools, from Stephane Teletchea, shows how to create helicoidal plots from Amber trajectories.